Dmytro Lituiev's repositories
tensorflow
Computation using data flow graphs for scalable machine learning
FaST-LMM
Python version of Factored Spectrally Transformed Linear Mixed Models
pyFM
Factorization machines in python
Lasagne
Lightweight library to build and train neural networks in Theano
fauxtograph
Tools for using a variational auto-encoder for latent image encoding and generation.
JLD.jl
Saving and loading julia variables while preserving native types
MapBySeqHmmPy
Mapping Mutations by High Throughput Sequencing of Bulked Segregants
freebayes
Bayesian haplotype-based polymorphism discovery and genotyping.
vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
trackPollenTube
scripts for tracking pollen tubes and extraction of intensio- and ratiometric Ca2+ signals from pollen tubes and synergids
sqlite3pp
SQLite3++ - C++ wrapper of SQLite3 API
snpdb
a tool to port SNPs from vcf to SQLite database
MapBySeqHmm
a hidden Markov chain model based method for denoising mapping-by-sequencing data