Cedric Midoux's starred repositories
Cartes_Sorts_5E
Des cartes de sorts pour les différentes classes du jeux de rôle 5E
MicrobiotaProcess
:microbe: A comprehensive R package for deep mining microbiome
microbiomeExplorer
The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or through a Shiny application. Written by Janina Reeder and Joseph N. Paulson.
InraeThemes
Unofficial collection of templates and themes in line with INRAE's design system
stats-illustrations
R & stats illustrations by @allison_horst
IFB-FAIR-data-training
Support for the IFB training on FAIR data. Web site: https://ifb-elixirfr.github.io/IFB-FAIR-data-training/
PIPprofileR
PIPprofileR is a tool to easily generate and explore Profiles of Percent Identical Positions from a fasta file (nucloetide or peptide sequences).
snakemake-workflows
An experimental repo for common snakemake rules and workflows
ont-assembly-polish
ONT assembly and Illumina polishing pipeline
Long-read-assembler-comparison
Benchmarking of long-read assembly tools for bacterial whole genomes
Assembly-methods-nanopore
Assembly methods for nanopore-based metagenomic sequencing: a comparative study
phyloseq-extended
Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" provided by the platforms Migale and Genotoul