Cedric Midoux (CedricMidoux)

CedricMidoux

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Company:@inra-migale

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Cedric Midoux's starred repositories

Cartes_Sorts_5E

Des cartes de sorts pour les différentes classes du jeux de rôle 5E

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dndR

Dungeons & Dragons Functions for Players and Dungeon Masters

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paletteer

🎨🎨🎨 Collection of most color palettes in a single R package

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MicrobiotaProcess

:microbe: A comprehensive R package for deep mining microbiome

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microbiomeExplorer

The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or through a Shiny application. Written by Janina Reeder and Joseph N. Paulson.

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InraeThemes

Unofficial collection of templates and themes in line with INRAE's design system

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stats-illustrations

R & stats illustrations by @allison_horst

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tidyverse

Introduction à R et au tidyverse

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IFB-FAIR-data-training

Support for the IFB training on FAIR data. Web site: https://ifb-elixirfr.github.io/IFB-FAIR-data-training/

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PIPprofileR

PIPprofileR is a tool to easily generate and explore Profiles of Percent Identical Positions from a fasta file (nucloetide or peptide sequences).

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Trycycler

A tool for generating consensus long-read assemblies for bacterial genomes

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atlas

ATLAS - Three commands to start analyzing your metagenome data

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snakemake-workflows

An experimental repo for common snakemake rules and workflows

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ont-assembly-polish

ONT assembly and Illumina polishing pipeline

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Long-read-assembler-comparison

Benchmarking of long-read assembly tools for bacterial whole genomes

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Assembly-methods-nanopore

Assembly methods for nanopore-based metagenomic sequencing: a comparative study

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phyloseq-extended

Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" provided by the platforms Migale and Genotoul

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