Canales-Aguirre's repositories
admixture_pie_chart_map_tutorial
Tutorial for visualising admixture on a map
admixturePipeline
A pipeline that accepts a VCF file to run through Admixture
BayesAss3-SNPs
Modification of BayesAss 3.0.4 to allow handling of large SNP datasets
CMplot
đź“Š Circular and Rectangular Manhattan Plot
conStruct
method for modeling continuous and discrete population genetic structure
dartR
Importing and Analysing DArT type snp and silicodart data
DArTseq_pipeline
Scripts for DArTseq_pipeline
Dsuite
Fast calculation of Paterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
Ferrada-Fuentes_etal_2023_Fishes
Data microsatellite of Trachurus murphyi used in the article Ferrada-Fuentes et al. (2023) published in Fishes
genotype_plot
A set of functions to visualise genotypes based on a VCF
ggcoverage
Visualize and annotate genomic coverage with ggplot2
ggman
R package to create manhattan plots using ggplot
lecluvindex
Chilean UV index plugin for the Le bot.
marmap
Import, plot and analyze bathymetric and topographic data
MitoZ
MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
physalia-lcwgs
Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 11-14, 2021
popgen-notes
Population genetics notes
primer3
Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
redlistManipulatr
redlistManipulatr collects a group of functions used to pull and manipulate IUCN Red List habitat and elevation data
scrivomatic
A writing workflow using Scrivener's style system and Pandoc for output…
seascape_rda_tutorial
Tutorial for performing redundancy analysis
utility_scripts
Scripts for population genetics analysis
vcf2conStruct
convert VCF biallelic SNP data to format required for conStruct R package (https://github.com/gbradburd/conStruct)
VcfHunter
VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant calling, manipulate vcf files, perform chromosome painting of accessions based on the contribution of ancestral groups, select marker for genetic map analysis and perform pairwise chromosome linkage of ordered markers.