Rafael Camacho's repositories
teaching-bioimage-analysis-python
A place to collect information used in lectures, demos, workshops, etc.
MyFavouriteBIAStool_NEUBIAS
Favorite imaging analysis tools of NEUBIAS members - editor Kota Miura
FRET-calculations
This repository contains the code necessary to simulate the fluorescence emission of an anisotropic ensemble of GFP molecules when excited by polarized light.
Zeiss-OAD-examples
Examples of ZEISS OAD scripts for Guided Acquisition
CamachoDejay.github.io
Personal website of Rafael Camacho Dejay
diffusion_binding_simulations
Simulations used in the article: Mapping transient protein interactions at the nanoscale in living mammalian cells
POLIM_minimal
Minimal working example of the single funnel approximation analysis for 2D POLIM data
ProgrammingSessions
This repo contains the material used during the Programming Sessions of KU Leuven. Our main idea is to teach programming and the MATLAB language to young researchers.
Amyloid_Aggregation_Segregation_SciRep10_10127
Image analysis of cell aggregation for: Amyloid precursor protein-b facilitates cell adhesion during early development in zebrafish. Sci Rep 10, 10127 (2020). https://doi.org/10.1038/s41598-020-66584-8
binder_playground
Playing around with binder
CamachoDejay
Config files for my GitHub profile.
czi_spec_im_load
Loading and handling of spectral imaging data from CZI format using bioformats
GLRTparticleDetection
minimal example of a Generalized Likelihood Ratio Test (GLRT) for the localization of single emitters in a fluorescence microscopy image
high-throughput-screening
Code related to the article: High-throughput time-resolved morphology screening in bacteria reveals phenotypic responses to antibiotics doi:10.1038/s42003-019-0480-9
indigo
:ramen: Minimalist Jekyll Template
jbook-test
Testing jupyter books
laurdan_macro_FIJI
ImageJ macro for GP images analysis Quantitative Imaging of Membrane Lipid Order in Cells and Organisms
Moon
Moon is a minimal, one column jekyll theme.
ome-zarr-examples
Keeping track of ome-zarr generation from different microscopes and formats
SStenberg_3Dyeast_tools
ImageJ macro tools for Simon Stenberg to assist him in his yeast segmentation and quatification