CalCOFI / rCRUX

A repository for my work on rCRUX

CalCOFI/rCRUX Issues

Length of sequence headers after derep and clean
Updated 6 months ago
Readme error
Updated 6 months ago
Default evalue for run_primer_blastn is 3e+07
Closed 9 months ago2
NCBI download code
Closed a year ago1
ReadMe install pointing to old github repo
Closed a year ago1
Add `Remotes` in description files for github repo files
Updated a year ago
Add `biocViews:` to description for bioconductor package installation
Updated a year ago
A `set.seed()` in randomisation functions e.g. species blast
Closed a year ago1
clean/document modifiedPrimerTreeFunctions.R
Updated a year ago
update examples
Closed a year ago1
Simplify logic in `blast_datatable` -> `run_blastdbcmd_blastn_and_aggregate_resuts()`
Updated a year ago
Consistent use of text output formats - csv, tsv
Updated a year ago
Address `check()` issues
Closed a year ago
Referencing magrittr::`%>%` pipe in functions
Closed a year ago1
Improve `run_primer_blastn()` + ncbi_bin parameter
Updated a year ago
consistent use of packages
Updated a year ago
Use of `paste0()` for file paths, can/should use `file.path()`
Closed a year ago
get_seeds_local() compares strings instead of numbers
Closed 2 years ago1
ncbi path variable not carried forward?
Closed 2 years ago5
Suggestion: multithread
Closed 2 years ago1