CalCOFI / rCRUX

A repository for my work on rCRUX

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Improve `run_primer_blastn()` + ncbi_bin parameter

Shaunson26 opened this issue · comments

Can improve the code in run_primer_blastn() to deal with if the binary is in the PATH or a user supplied path. Currently the code is copied for each instance, but one has an extra "-num_alignments", "10000000",.

Goal is to have 1 system2() call, where the command is build given what we know about the PATH or a user supplied path