CINPLA

exdir

Directory structure standard for experimental pipelines.

neuronify

An educational neural network app using the integrate-and-fire method.

spatial-maps

Analysis for spatially modulated spiking activity, e.g. place cells, grid cells

RippleNet

tracking-plugin

Open Ephys plugins for tracking experiments

expipe

Experiment-data management platform

NeuroCNN

pyopenephys

Python reader for open ephys

Library

Overview of books for our library

KNPsim

Simulator for ion concentrations using the electroneutral "Kirchoff-Nernst-Planck" (KNP) formalism in FEniCS

cinpla-base

Repository to fork when you want to start a new project

EDPRmodel

An electrodiffusive, ion conserving Pinsky-Rinzel model with homeostatic mechanisms

EDPRmodel_analysis

MultiLinearPopulationAnalysis-MLPA

Example code for Multi-Linear Population Analysis (MLPA), Geddes et al.

phase-precession

Measures for phase precession

PRmodel

An implementation of the Pinsky-Rinzel model in Python

pyxona

Python library for reading Axona files

spike-statistics

Analysis of spiking stats e.g. correlogram etc

expipe-plugin-cinpla

Plugins for expipe command line interface

Skaar_et_al_2020_PLoS_Comput_Biol

visual-stimulation

Analysis of visual stimulation e.g. drifting gratings and stuff

septum-mec

Analysis for the septum-mec project

CA2_MEC

Repository to fork when you want to start a new project

CMRO2estimation

Code for estimating CMRO2, presented in Sætra et al. 2020.

Drop_In

edNEGmodel

An electrodiffusive neuron-extracellular-glia model with somatodendritic interactions

edNEGmodel_analysis

expipe-io-neuro

Neuroscience specific converters for expipe

logic-gate-plugin

Open Ephys plugin to combine TTL signals with logic operators

sync-plugin

Open Ephys plugin to generate software Sync events