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CCBR / Dockers

A collection of Dockerfiles to facilitate reproducibility across computing environments.

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Kraken2

kopardev opened this issue · comments

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Building a minikraken2 database with representative/reference genomes only.
location: /data/CBLCCBR/kopardevn_tmp/kraken2/
8936 genomes downloaded to /data/CBLCCBR/kopardevn_tmp/kraken2/fasta (included bacteria/fungi/invertebrate/protozoa/viral/archaea)

  • 91724736 ids are unmapped. ... Solution: write a python script to use esearch tools to create an accession2taxid file to be added to the taxonomy folder