Beast code in Giters

Bastien Boussau's repositories

PHYLDOG

Software for estimating species tree and gene trees in the presence of duplications and losses

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phylocut

Program to cut phylogenetic trees at specific duplication nodes.

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TOLDating

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DatingWithConsAndCal

Validating a new approach to dating phylogenies.

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Genqual

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Notebooks

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phylomerge

Merging partial sequences according to a phylogenetic tree

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seq_diff_benchmark

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boussau.github.io

Website

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COVID-19

COVID-19 Italia - Monitoraggio situazione

CC-BY-4.0000

COVID-20

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

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getAllDistancesFromFocalSequence

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MappingdNdSDuplications

Mapping dN/dS substitutions on the branches of a species tree

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phylosim

An R package for the Monte Carlo simulation of sequence evolution

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plotODTLTree

R code to plot a species phylogenetic tree decorated with ODTL events

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pruneTreeGivenAlignment

Prunes a phylogenetic tree given an alignment where some sequences may be missing.

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revbayes.github.io

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SubStory

Substitution mapping and ancestral sequence reconstruction

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