Bruno's starred repositories
powerpoint-progressbar
Automation of the creation of a progress bar in powerpoint, and an overview of the sections on each slide
Intro-to-rnaseq-hpc-O2
This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
How-to-analyze-GEO-microarray-data
GSE analysis for microarray data, for the tutorial as shown in https://www.youtube.com/watch?v=JQ24T9fpXvg&t=947s
pioreactor
Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.
Machine-Learning-in-Biotechnology-and-Life-Sciences
Machine Learning in Biotechnology using Python, published by Packt
Phenobottle
An open-source Raspberry-Pi based photobioreactor for cultivating and assessing physiology (photosynthesis & productivity) in microscopic algae.
12-days-of-biopython
12 days of Biopython is a collection of 12 videos explaining in details how to work with Biopython, a bioinformatics tool using a real life examples.
DataScience_ArtificialIntelligence_Utils
Examples of Data Science projects and Artificial Intelligence use-cases
Python-pairwise-comparison-letter-generator
Using python to generate letter representations from pair-wise significance tests using Piepho method
sanbomics_scripts
scripts and notebooks from sanbomics
WholeCellEcoliRelease
Release of the whole cell E. coli model.
python-science-tutorial
Series of notebooks to illustrate different plotting features using Python
intro_to_param_estim
Parameter estimation of ODE models describing biological processes
tclab_jupyter
A Jupyter based application to explore different control techniques of a simple temperature plant
pipette-show
A webbased visual pipetting aid.
RoseTTAFold
This package contains deep learning models and related scripts for RoseTTAFold
fermentation-mpc
Model predictive control (MPC) for fermentations
MSE2001python
Files for the MSE2001 course Introduction to Python for Materials Engineers