BlueBrain / BlueCelluLab

Biologically detailed neural network simulations and analysis API

https://bluecellulab.readthedocs.io/en/latest/

BlueBrain/BlueCelluLab Issues

Allow custom section names in hoc files for Cell object
Closed 3 months ago3
bug when morphology is not in a subfolder
Updated 3 months ago
core::Cell::re_init_rng does not take myelin section type into account
Closed 4 months ago2
celsius and v_init can be defined by neuron or within the template, enable it
Closed 4 months ago3
Address multiple neuron references pointing to same recording
Updated 5 months ago
simplify RNGSettings logic for setting the seeds
Closed 5 months ago1
Add missing unit tests for tools functions
Closed 5 months ago1
add unit tests for bluecellulab/tools.py using sonata simulations
Closed 5 months ago1
add neuroglia synapses in bluecellulab
Updated 5 months ago
Function cell.get_psection not working
Closed 5 months ago4
during import, some neuron function returns 1 check if it is something important
Closed 5 months ago8
map SONATA spec's LINEAR input
Updated 5 months ago
Run a profiler to detect performance bottlenecks
Updated 5 months ago
logging info in importer
Closed 5 months ago5
stimulus duration of add_noise_step is longer than informed
Updated 5 months ago
bug in the assignment of AIS_scaler/soma_scaler
Closed 6 months ago
use public_hoc_cell instead of accessing getCell in core.py
Closed 6 months ago1
Support hoc templates that load morphologies with .h5 extension
Updated 6 months ago
Add default segx to add_voltage_recording
Closed 6 months ago
Discrepancy in Synapse-Replay Simulation Outputs between Neurodamus and BlueCelluLab
Updated 6 months ago11
switch to pydantic2.0
Closed 8 months ago
drop py37 support
Closed 8 months ago1
Use logging?
Closed 8 months ago3
Issue with Synaptic and Somatic Voltage traces using synapse_replay feature
Closed 9 months ago9
replace neuron.h.nrn_load_dll call with the high level load_mechanisms function
Closed 10 months ago
Isolate NEURON Simulations in Separate Processes
Updated 10 months ago1
decouple init_callbacks & weight_updates from plotting
Updated 10 months ago
Issues while initializing Excitatory Plastic cells
Closed 10 months ago16
Add unit test for EuclideanSectionDistance
Updated 10 months ago1
core::Cell::initialize_synapses is not supporting GluSynapse synapse type
Closed 10 months ago
Use of ramp protocol for the calculation of steady state voltage
Updated a year ago1
Discrepancy in Results Between Neurodamus and BlueCelluLab on Zenodo SSCX Circuit
Updated a year ago1
Have an alternative template naming
Closed a year ago
use sonata terminology in the API
Updated a year ago
SSim API needs simplifications
Updated a year ago
having consistent sampling options across ssim methods
Closed a year ago
First doc page should be readme
Closed a year ago
add unit test for get_allsections_voltagerecordings
Closed a year ago
use the built-in logging module
Closed a year ago1
BUG: template_format has None as default. It should be a str however
Closed a year ago1