BjornFJohansson

pydna

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

seguid_calculator

A gui for calculating seguid checksums for biological sequences

pydna-examples

https://github.com/MetabolicEngineeringGroupCBMA/pydna-examples

pygenome

Pygenome provide Python access to the Saccharomyces cerevisiae genome.

WikidPad

WikidPad is a single user desktop wiki

pydnaweb

Online PCR simulator, Tm calculator and primer designer and more!

dnaudit

DNAUDIT is a software tool that verifies cloning strategies expressed as text files using a very light markup. This format is identical to the one produced by some of the Pydnaweb tools.

obsidian_git_experiment

ypkpathway

Automatic pathway assembly with the YeastPathwayKit

An-Hour-of-Python

:hourglass: An hour of introduction to Python. Using the Anaconda Python distribution and the Spyder editor.

AutoSlideProcessor

Convert files in a Github repository using TravisCI (for example Libreoffice Impress 🢂 PDF) and push resulting files to a Dropbox folder

plasmid-sketcher

Visual plasmid sketcher

tm

Comparison of methods to calculate melting temperature for oligonucleotides

awesome-biology

Curated (meta)list of resources for Biology.

BjornFJohansson

My personal GitHub profile.

CodonAdaptationIndex

Python Implementation of Codon Adaption Index

flask-desktop

flask-desktop lets you create first class desktop applications in Python with HTML/CSS

justfortest

blabla

minaj

command line script to facilitate building conda packages and uploading to Anaconda cloud

openVectorEditor

Teselagen's Open Source Vector/Plasmid Editor Component

pLannotate

Webserver and command line tool for annotating engineered plasmids

PyDymoLabel

A simple tool to print labels with Dymo printers

pyelph

pYPKa_ZE

pYPKa_ZE

pyquizzer

A python package for the creation of tests and quizzes on and off line.

robotology-superbuild

CMake/YCM-based superbuild to simplify the build process of robotology projects.

ShareYourCloning_backend

The backend application for ShareYourCloning

test

warehouse

The Python Package Index

ypk-xylose-pathways

Jupyter notebook files describing metabolic pathways for Saccharomyces cerevisiae D-xylose utilization made using the Yeast Pathway Kit.