BioMedIA / MIRTK

The Medical Image Registration ToolKit (MIRTK), the successor of the IRTK, contains common CMake build configuration files, core libraries, and basic command-line tools. Extension packages are hosted by the MIRTK GitHub group at

https://github.com/MIRTK

BioMedIA/MIRTK Issues

TBB deprecation messages
Closed 4 months ago
Build failure against `gcc-13`: `GenericRegistrationFilter.h:267:53: error: declaration of 'virtual void mirtk: :GenericRegistrationFilter::SimilarityMeasure`
Updated 4 months ago
Incomplete build windows
Updated a year ago
Help convert-dof, register -> ANTs
Closed 2 years ago1
Problem with installing MIRTK
Updated 2 years ago
Problem with compose-dofs and approximate option
Updated 2 years ago
Any plans to make a release?
Updated 2 years ago
Please support oneTBB
Closed 2 years ago1
Error in using the invert-dof
Updated 2 years ago1
Issue with VTK 9.0.3 build in Dockerfile on Linux
Closed 2 years ago2
Can't make the files with PointSet
Closed 2 years ago1
Rename master branch to main
Updated 2 years ago
Calculate curvature in the script process-surfaces-hemisphere
Updated 3 years ago
Installation problems
Updated 3 years ago3
Problem installing MIRTK in macOS
Updated 3 years ago
Error when using recon-neonatal-cortex
Updated 3 years ago2
`evaluate-label-overlap` does not support documented option
Updated 3 years ago
MultiLevelTransformation copy constructor does not copy GlobalTransform
Closed 3 years ago
[Docker image] [register] error while loading shared libraries: libMIRTKPointSet.so.0 annot open shared object file: No such file or directory
Updated 3 years ago5
static install failed after built success
Closed 3 years ago6
AppImage is missing required VTK libraries
Updated 3 years ago
remesh-surface: Segmentation fault when using AppImage
Closed 3 years ago1
static build failed
Closed 3 years ago1
Singularity tolerance seems too large in Modules/Numerics/src/Matrix.cc
Updated 4 years ago
Deformable: Keep pial surface inside the brain mask
Closed 4 years ago1
Use more efficient implementation of merge-surfaces DeleteCellsNearLabelBoundary
Updated 4 years ago
Not compatible with vtk-9
Closed 4 years ago1
Fix LDPATH in Python `_putenvs()` to use backward slashes
Updated 4 years ago
intensity scaling in construct-atlas
Closed 4 years ago1
c8e3555 is broken: MIRTKInstallManifest.txt: No such file or directory
Updated 4 years ago
Support JPEG image file format
Updated 5 years ago4
Installation on Windows 10 with TBB
Updated 5 years ago1
invert-dof: output dense displacement field
Updated 5 years ago
gcc 8 memory leak issue in Surface Collision routine
Closed 5 years ago5
evaluate-similarity yields unexpected results when images are on different grids
Closed 5 years ago4
Local rigidity - Orthogonality constraint
Updated 5 years ago
Jacobian penalty term as described by Ashburner & Friston
Updated 5 years ago
Windows bug for reading imgTimes.lst files with register.exe
Updated 5 years ago
MIRTK Docker container not working in Windows
Updated 5 years ago
edit-image: modifies fourth voxel dimension in a 3D image in unexpected ways
Closed 5 years ago5
evaluate-overlap: unexpected results in summary measure
Closed 5 years ago3
Add tool to print label statistics
Updated 5 years ago1
aggregate-images: Unexpected results
Updated 5 years ago9
Docker application ´smooth-surface´ not working
Closed 5 years ago2
'scalable_allocation_command' not found
Updated 5 years ago9
Compilation error of SurfaceCollisions::GetCollisionType for 32-bit vtkIdType
Closed 5 years ago
Installed files refer to the stage directory
Closed 5 years ago1
CMake warns about missing top-level project() command
Closed 5 years ago
Please make the configure stage print in the end which optional dependencies were found and which weren't
Updated 5 years ago1
Incorrect resample-image -size option help
Closed 6 years ago1