BioJulia / GeneticVariation.jl

Datastructures and algorithms for working with genetic variation

BioJulia/GeneticVariation.jl Issues

Cannot install the package for Julia 1.0.1
Closed a year ago2
Cannot install this package
Closed a year ago1
Add Project.toml
Closed a year ago4
Fails to parse metadata with hypen in the key
Updated a year ago
GeneticVariation.VCF.Reader does not like output from the gatk tool: funcotator
Updated 2 years ago
multiple allele separated by semicolon in ALT field
Updated 3 years ago
cannot read vcf from Sanger
Updated 4 years ago1
Make parser unambiguous
Updated 4 years ago2
Looping over vcf file 10x slower than reading line by line
Updated 4 years ago
Looping over a VCF file seems to incur huge memory
Updated 4 years ago
BCF.chrom always returns 1
Updated 5 years ago3
ERROR: LoadError: GeneticVariation.VCF.Reader file format error on line 254 ~>";esv3585"
Updated 5 years ago5
LoadError: ArgumentError: Package GeneticVariation does not have Compat in its dependencies
Updated 6 years ago
1.0 Support
Closed 6 years ago3
ERROR: LoadError: GeneticVariation.VCF.Reader file format error - unexpected metainfo line from GATK command line
Closed 6 years ago4
GeneticVariation.VCF.filter(reader) fails when encounters missing filter
Closed 6 years ago3
Drop julia 0.5 support
Closed 7 years ago1
get_bio_fmt_specimens() has started failing
Closed 7 years ago2