HIbrahim's starred repositories
Data-science
Collection of useful data science topics along with articles, videos, and code
getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
PyRosetta.notebooks
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
NeuralPLexer
NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
openchat-ui
An open source UI for OpenChat models
Auto3D_pkg
Auto3D generates low-energy conformers from SMILES/SDF
Complete-Applied-Machine-Learning-with-Projects-Series
This repository contains everything you need to become proficient in Applied Machine Learning
streamlit-condition-tree
A Streamlit component to build a condition tree
cgenff_charmm2gmx
Python scripts to convert CGenFF stream files to GROMACS format
CageCavityCalc
Automated calculation of cavity in molecular cages
PrinciplesOfDrugDiscovery
Slides from the lecture Principles of Drug Discovery
pyConferenceHelper
collection of scripts that allow you to send emails from python
gromacs_pca_porcupine
Do PCA analysis using Gromace and display by Porcupine plot
mdakit_sasa
Toolkit to calculate the surface accessible area of a molecular dynamic trajectory
MD_project_template
A project template creator mainly focused on Molecular Dynamics simulation and analysis, using conda/mamba and git. Still under active development.
pharmacodynamic-response-models
Collection of pharmacodynamic response models, including dose-response, inhibitor-response, and various receptor-response models that can be fit to response data.
py50-streamlit
Streamlit version of py50