Giters
BenoitMorel
/
GeneRax
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Stargazers:
66
Watchers:
9
Issues:
76
Forks:
11
BenoitMorel/GeneRax Issues
Error message: Cannot read alignment file (file exists but is invalid)
Closed
2 months ago
QMaker models?
Updated
9 months ago
Comments count
9
Assertion '0.0 != new_loglh' failed ?
Closed
9 months ago
Comments count
3
Termination before reconciliation
Closed
9 months ago
Comments count
5
Specifying number of cores
Closed
9 months ago
Comments count
2
Termination of Gene tree Reconciliation
Updated
9 months ago
Comments count
3
Error during building: "make: *** [Makefile:91: all] Error 2"
Updated
10 months ago
Comments count
2
Use with transcriptome data
Closed
a year ago
Comments count
2
Error: Input alignment file does not exist
Closed
a year ago
Comments count
5
No valid families?
Closed
a year ago
Comments count
12
Checkpoints to restart an optimization step if it gets interrupted
Updated
a year ago
Comments count
10
User input --dup-rate and --no-dup
Closed
a year ago
Comments count
8
Better output the event counts
Closed
a year ago
Comments count
1
Failing unit test: ./build/bin/species_splits_tests
Closed
a year ago
Trailing whitespaces in MSA labels considered significant
Closed
a year ago
Comments count
5
Cannot read alignment file
Closed
2 years ago
Comments count
4
Add a script to export per-family likelihoods in Consel format
Closed
2 years ago
Invalid files followed by "input alignment file does not exist"
Closed
2 years ago
Comments count
10
Check that MSAs and gene trees do not contain the same label twice
Closed
2 years ago
Comments count
1
Check that gene trees are provided in the EVAL mode
Closed
2 years ago
Comments count
1
Compilation error, presumably due to pll change
Closed
3 years ago
Comments count
3
Broken installation
Closed
3 years ago
Comments count
2
Support values
Closed
3 years ago
Comments count
2
Crash with mpirun and wrong family path
Closed
3 years ago
recPhyloxml output placing gene branches outside species tree
Closed
3 years ago
Comments count
4
using GeneRax on symbiont-host trees with multiple symbionts per host
Closed
3 years ago
Comments count
5
Can I use Reference strain as a rooting strain for a SNP based species tree?
Closed
3 years ago
Comments count
2
Detect polytomies in the input gene trees and return a clean error
Closed
3 years ago
Comments count
1
Improve the mapping file parser
Closed
3 years ago
Compilation Error: Built target pll_obj
Closed
3 years ago
Comments count
4
Where is species tree for example
Closed
3 years ago
Comments count
3
Add losses in the nhx reconciliation output
Updated
4 years ago
What is the --reconciliation-samples parameter doing?
Closed
4 years ago
Comments count
2
Recommended reconciliation model
Closed
4 years ago
Comments count
2
"reconciliations" folder missing
Closed
4 years ago
Comments count
7
Availability of Aleml-like (.rec file) output in newick format?
Updated
4 years ago
Comments count
1
Account for incompleteness in the reconciliation model
Closed
4 years ago
Generax results interpretation
Closed
4 years ago
Comments count
3
new visualizations
Closed
4 years ago
Comments count
2
double free or corruption
Closed
4 years ago
Comments count
2
Compilation error
Closed
4 years ago
Comments count
8
JointSearch testing problem
Closed
4 years ago
Comments count
2
Error reading species tree
Closed
4 years ago
Comments count
2
generax crashes when reconciling gene trees with the species tree
Closed
4 years ago
Comments count
14
incomplete event reporting with NHX reconciliated tree format
Updated
4 years ago
Comments count
2
Questions?
Closed
4 years ago
Comments count
4
redundancy in transfer output files in sampling mode
Updated
5 years ago
nhx output is missing
Closed
5 years ago
Comments count
2
Clarification on output rates and weird transfer-less scenarios
Closed
5 years ago
Comments count
9
tip label related assertion fails
Closed
5 years ago
Comments count
3
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