BBCG / epialleleR

Fast, epiallele-aware methylation caller and reporter — an R/Bioconductor package

https://BBCG.github.io/epialleleR/articles/epialleleR.html

BBCG/epialleleR Issues

Additional filtering by BAM flags
Closed a month ago
remove ggstance dependency
Updated 2 months ago1
bwa-meth (bwa mem) paired-end alignment with dovetails
Closed 2 months ago1
Support BED input?
Closed 4 months ago2
Truncated bam output when using callMethylation with bwa-meth bam input
Closed 4 months ago6
memory management
Closed 5 months ago
Filter unconverted reads from MHL
Closed 5 months ago
Long-read seq input
Closed 6 months ago
what's mean of VEF in result file
Closed 6 months ago1
Base trimming for RRBS
Closed 6 months ago
add support for BSMAP
Closed 6 months ago2
Reading BAM fileError: BAM seems to be predominantly single-end or not sorted by QNAME. Single-end alignments are not supported yet. If paired-end, please sort using 'samtools sort -n -o out.bam in.bam
Closed 6 months ago4
pattern positions are 0-based
Closed 6 months ago1
lMHL calculations
Closed a year ago
simulate BAM
Closed a year ago
Looks like seqlevels styles of BAM and VCF don't match
Closed a year ago3
Preparing amplicon report Error
Closed a year ago6
install failed ！！
Closed a year ago9
Compilation error
Closed a year ago2
Call methylation
Closed a year ago
Single-end reads
Closed a year ago2