BBCG / epialleleR

Fast, epiallele-aware methylation caller and reporter — an R/Bioconductor package

https://BBCG.github.io/epialleleR/articles/epialleleR.html

Single-end reads

oleksii-nikolaienko opened this issue a year ago · comments

Oleksii Nikolaienko commented a year ago

Add a function to read single-end BAM files

Oleksii Nikolaienko commented a year ago

This may rely on some kind of "rcpp_check_bam", which will parse 100+ reads and test if

single- or paired-end
coord-sorted
XM present

After, these checks can be dropped from rcpp_read_bam

Oleksii Nikolaienko commented a year ago

Check done, but single-end pending