iupmBayes is a set of R scripts for estimating the number of infectious units per million (IUPM) from HIV sequence data obtained from a quantitative viral outgrowth assay (QVOA). These scripts and data sets accompany a manuscript that has been submitted for peer review.
These are two tab-delimited tabular data sets that accompany our manuscript. They comprise the following variables:
- Participant number
- Well number
- Number of cells plated in the well
- p24 positive (binary outcome)
- Region (HIV gene)
- Total variants for participant by region
- Variants per region per well
- Variant index
- Presence of variant (binary outcome)
These data sets can be read into R using the provided parse.data function.