Arnau Montagud's repositories
PROFILE_v2
A repository of code and analyses related to the paper "Patient-specific Boolean models of signaling networks guide personalized treatments".
Logical_modelling_pipeline
Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, developed by the Computational Systems Biology of Cancer group in Bioinformatics Laboratory of Institut Curie (Paris)
DockerCollection
Collection of Docker images
PhysiBoSS_v1
Multiscale simulation of multi-cellular system
biodivine-boolean-models
A collection of 140+ Boolean networks from various sources useful for benchmarking or testing.
cobra_cbm_tutorial
This a basic tutorial on Constraint-Based Metabolic Modeling based on python-cobra
COVID19
Rapid prototyping coalition for SARS-CoV-2 tissue infection dynamics. (integrated model)
PhysiBoSSv2-EMEWS
EMEWS template for PhysiBoSSa
rocker-versioned
Run current & prior versions of R using docker
Roma
Representation of Module Activity
rRoma
An r interface to perform ROMA
rRomaDash
a shiny dashboard to interact with rRoma