Alasdair Gray's repositories
HCLSValidator
Validator for HCLS dataset descriptions
SemSci2018
Using a Jupyter Notebook to perform a reproducible scientific analysis over semantic web sources
biohackathon2022-bioschemas-consumer
An ETL pipeline to construct IDPcentral Knowledge Graph using Bioschemas JSON-LD data feeds
bioschemas-github-markup-example
Repository hosting examples of markup added to GitHub pages, mainly used for tutorials
bioschemas.github.io
Files for the Bioschemas website.
cc-cert-core
Content outline for new Creative Commons Certification programs
content
Experimental repo of bio.tools content for augmentation with other sources of tool information
ELIXIR-Tox
Repository to organize the further development of the Community Proposal to ELIXIR.
FederatedPhacts
Experiments in federated querying
governance
The governance process and model for Project Jupyter
HCLS-Stats-Queries
Queries for computing the statistics reported in the Health Care and Life Sciences Dataset Descriptions Community profile. The link below takes you to a grlc.io API where you can use the queries over your own endpoint.
JupyterHackathonEdinburgh
Resources from the Social Science Goldrush Jupyter Hackathon 29th of May University of Edinburgh
linkml
Linked Open Data Modeling Language
matlab-novice-inflammation
Software Carpentry introduction to MATLAB for novices using inflammation data.
members
Members of the Knowledge Graphs Interest Group at the Alan Turing Institute
mum-benchmark
Automatically exported from code.google.com/p/mum-benchmark
nanopub-server
A simple server to publish nanopublications
NanoTopicMapping
More than 10 Million of nanopublications have been published in life Sciences domain across over the world. We took 4.8 Million from them for our analysis. They are from neXtProt, DisGeNET, and Wikipathways datasets. They do not provide the interoperability between the datasets. Here we proposd the framework that brings the nanopublications together on particular topic with timeline of discourse.
oops-plugin
A plugin for the Protégé ontology editor software that evaluates ontologies to detect the use of bad practices.
ro-crate
Research Object Crate
shex.js
shex.js javascript package
SWAT4HCLS2022-ChEMBL-bioschemas-mapping
Hackathon project aims at mapping the ChEMBL RDF small molecules, proteins and taxons onto Bioschemas.org entities and produce the corresponding JSON-LD
TeachingMaterials
Teaching materials used for the Semantic Web components of the Big Data Management course at Heriot-Watt University.
toco_ontology
TOUCAN Ontology, an ontology for hybrid telecommunication networks