AaronFeller

minLoRA

minLoRA: a minimal PyTorch library that allows you to apply LoRA to any PyTorch model.

molcloud

Make a bunch of molecules

minimalaf

Minimal AlphaFold

esm

GML2023

Graph Machine Learning course, Xavier Bresson, 2023

plurality

Root repository for ⿻數位 Plurality: The Future of Collaborative Technology and Democracy by E. Glen Weyl, Audrey Tang and the Plurality Community

AutoPeptideML

AutoML system for building trustworthy peptide bioactivity predictors

REINVENT4

AI molecular design tool for de novo design, scaffold hopping, R-group replacement, linker design and molecule optimization.

awesome-kan

A comprehensive collection of KAN(Kolmogorov-Arnold Network)-related resources, including libraries, projects, tutorials, papers, and more, for researchers and developers in the Kolmogorov-Arnold Network field.

btm

esm-s

Structure-Informed Protein Language Model

dyMEAN

This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"

LigandMPNN

mamba

Mamba SSM architecture

taipy

Turns Data and AI algorithms into production-ready web applications in no time.

PymolFold

Protein folding in Pymol

MetaPhlAn

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

MutateEverything

empress

A fast and scalable phylogenetic tree viewer for microbiome data analysis

empress-analyses

Analyses, figures, and artifacts for Empress.

sort-google-scholar

Sorting Google Scholar search results based on the number of citations

molformer

Repository for MolFormer

chemnlp

ChemNLP project

cinful

A fully automated pipeline to identify microcins along with their associated immunity proteins and export machinery

faiss

A library for efficient similarity search and clustering of dense vectors.

BARTSmiles

BARTSmiles, generative masked language model for molecular representations

CAMP

predicting peptide-protein interactions

genslm

GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics

bertviz

BertViz: Visualize Attention in NLP Models (BERT, GPT2, BART, etc.)

provis

Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."