AHdeRojas / NMIT

An R package for Microbial Temporal Dependency Comparison

Nonparametric Microbial Interdependence Test (NMIT)

The paper to descrbied the method is avaliable

Zhang, Yilong, Sung Won Han, Laura M. Cox, and Huilin Li. "A multivariate distance‐based analytic framework for microbial interdependence association test in longitudinal study." Genetic Epidemiology (2017).

R package

An R package for Nonparametric Microbial Interdependence Test (NMIT)

Installation

I assume that all auxillary packages are already installed

From an interactive R session:

library(devtools)
install_github("elong0527/NMIT")
library(NMIT)

Python

NMIT is avaliable in https://qiime2.org/ at nmit. A tutorial is also avaliabe (link).