A-Alaa / rosalind-cpp

Basic bioinformatics algorithms implementation using c++14

rosalind-cpp

This project aims to implement bioinformatics algorithms (BA track at rosalind.info) making use of C++11/14 STL. The Catch.hpp header-only library is used to write test cases for most algorithms. This project might be used further as an auxillary computational library in advanced projects. Currently ba1*, ba2*, ba3*, and ba4* are completely implemented. The rest are yet to come.

Instruction

Requirements

• CMake 3.4

Installation

• get the repository.

git clone https://github.com/A-Alaa/rosalind-cpp.git

• Building:

cd rosalind-cpp
mkdir build
cd build
cmake -DCMAKE_BUILD_TYPE=<Release|Debug>..
make -j4

• Running tests:

./src/test/tests

• Running individual algorithms:

cd ./src/app
./<executable> <input-file>

OR

<other-stdout-executable> | ./<executable>

Author

Asem Alaa
rosalind.info: http://rosalind.info/users/asem_alla/
email: [e-mail]