张宇亮's repositories
agmin
A comprehensive data mining and visualization framework for tabular aging features in clinical and omics assays.
battenberg
Battenberg R package for subclonal copynumber estimation
BRASS
Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.
CaVEMan
SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer samples. Supports both bam and cram format via htslib
clindet
A fully automated multi-omics data analysis pipeline based on Snakemake and singularity.
design-resource
A list of design resources.
ggpy
ggplot port for python
Gource
software version control visualization
homework_website
website code
maftools
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
neuralart
An implementation of the paper 'A Neural Algorithm of Artistic Style'.
papershare
https://psclub.netlify.com/
read.wos.R
functions to read data exported from Web of Science into R
ribosome-profiling-analysis-framework
Ribosome profiling analysis framework as described in de Klerk E., Fokkema I.F.A.C et al (2015). Alignment, triplet periodicity analysis, detecting ORFs.
TRF2GFF
Convert Tandem Repeat Finder dat file output into gff3 format
zyllifeworld
This repo stored the files of my blog