zyli93 / CoNuVar

CoNuVar is Copy Number Variation

CoNuVar

This repo is for Copy Number Variation, a.k.a. CoNuVar.

Zeyu Li

TODO

• Change initialization
• Evaluate cost by following equation, $$\sum_i(y'_i - y_i)$$
• Change sampling weight from w.r.t count to w.r.t TPM from dataset.
• Output ground truth, FoldChange, and predicted y to a file.