zx8754

gwasforest

Make forest plot with GWAS data

msigdbr

MSigDB gene sets for multiple organisms in a tidy data format

tinyplot

Lightweight extension of the base R graphics system

paletteer

🎨🎨🎨 Collection of most color palettes in a single R package

dxda

CLI tool to manage the download of large quantities of files from DNAnexus

Summix

Summix2

Summix_manuscript

Data and scripts for the Summit manuscript.

granges

A Rust library and command line tool for working with genomic ranges and their data.

fastverse

An Extensible Suite of High-Performance and Low-Dependency Packages for Statistical Computing and Data Manipulation in R

plotgardener

bedtoolsr

R package wrapping bedtools

humapr

Visualise topographic human data as choropleths in R

geni.plots

GENI plots to visualise results from genome-wide association studies

gwasRtools

Some useful tools for processing GWAS output

myManhattan

R function to generate Manhattan plots using ggplot

plotsr

Tool to plot synteny and structural rearrangements between genomes

orange3

🍊 :bar_chart: :bulb: Orange: Interactive data analysis

Awesome-Bioinformatics

A curated list of awesome Bioinformatics libraries and software.

PRS-adjustment

UK_Biobank_GWAS

Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release

OutlierConf2021

⭕ Slides and hands-on codes for my talk "ggplot Wizardry: My Favorite Tricks and Secrets for Beautiful Plots in R" at the 1st OutlierConf, February 4–7 2021.

1000_genomes_examples

Examples using R and 1000 genomes data

plot-VCF

visual analysis of your VCF files

EGEA

Every Gene Ever Annotated in published GWAS

learngenomics.dev

A guided, intuitive introduction to genomics for software engineers. Curated by the community.

makefiletutorial

Learn make by example

tfrmt

r package for formatting tables

bigsnpr

R package for the analysis of massive SNP arrays.

stat_rethinking_2022

Statistical Rethinking course winter 2022

ivs

Interval Vectors