Zuber's repositories
biocluster
Tutorial on building a computing cluster for bioinformatics
awesome-genome-visualization
A list of interesting genome browser or genome-browser-like implementations
bioinfokit
Bioinformatics data analysis and visualization toolkit
bioinformatics-hacks
Scripts for miscelleneous bioinformatics tasks
Bioinformatics-sh-wf-cd
Bioinformatics analysis scripts, workflows, general code examples
Bioinformatics-Workshops
Workshops presented by the Gladstone Bioinformatics Core
CMash
Fast and accurate set similarity estimation via containment min hash
dragonstar2019
Genomics_human_genome_course
facets
Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
h3abionet16S
H3ABioNet 16S rDNA diverstity analysis package
improve16SIonTorrent
Scripts for 16S analysis from Ion Torrent data
InterVar
A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline
NGS-for-NIPT
R script for Non-invasive prenatal testing
RNA-seq
RNA-seq analysis pipeline based on Snakemake
SOAP3-dp
To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be configured to favor speed in trade of accuracy and sensitivity. SOAP3-dp, through leveraging the computational power of both CPU and GPU with optimized algorithms, delivers high speed and sensitivity simultaneously.
taxcollector
16S rRNA database
training-collection
Collection of bioinformatics training materials
training-material
A collection of Galaxy-related training material
TS
Torrent Suite
variant_calling_in_cancer_genomes_seminar
Variant Calling in Cancer Genomes
Windows-Subsystem-For-Linux-Setup-Guide
An in-depth Guide for getting started with the Windows Subsystem for Linux!
yt-channels-DS-AI-ML-CS
A comprehensive list of 180+ YouTube Channels for Data Science, Data Engineering, Machine Learning, Deep learning, Computer Science, programming, software engineering, etc.