zslastman's repositories
Tensor-Puzzles
Solve puzzles. Improve your pytorch.
TAD_coreg_paper
Code for my figures in the tad-coregulation project
Ribotransformer
Transformer based analysis of Riboseq data
xtail
Genome-wide assessment of differential translations with ribosome profiling data
cortexomics_modelling
This s a git containing only the code for the kinetic modeling in the cortexomics project
scNBMF
Negative binomial matrix factorization from single-cell RNAseq data
bioconda-recipes
Conda recipes for the bioconda channel.
galaxytools
:microscope::books: Galaxy Tool wrappers
Ribo_Lausanne
Riboseq on the 3 lausanne cell lines
RiboAnalysis
Riboseq analysis collaboration with orsalia
RiboDiff
RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data
atac_evo
The spin off evo story from the ATAC seq project
sequence_ml
Learning keras and python. Predicting transcription data from chromatin+sequence.
Tagseq
This is the code for the tagseq eQTL project
eRNA_project
Code for the eRNA project