zrcjessica

sc-power-analysis

Power analysis for scRNA-seq data

cts_cnn

demux

A Snakemake pipeline for running single-cell demultiplexing simulations.

ml_concepts

A collection of Jupyter notebooks containing tutorials for various machine learning concepts.

cse250a

Code for CSE 250A - Principles of Statistical Learning

ArchR

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

as_analysis

A complete Snakemake pipeline for detecting allele specific expression

bisb_bootcamp_19

Material for UCSD Bioinformatics and Systems Biology PhD program Bootcamp, 2019

ensemble_distillation

make_seurat

Run cellranger on snRNA-seq fastq files and create Seurat objecft

CRSsim

Contains code and instructions for simulating CRISPR regulatory screens and assessing performance of different methods

cse282

Some code for CSE 282: Bioinformatics Algorithms

fusion_twas

methods for functional summary-based imputation

gwas_tutorial

Introduction to GWAS and working with genotype data for UCSD BiSB Bootcamp 2018.

highlight

Syntax highlighter for R

ldsc

LD Score Regression (LDSC)

med277

Final project for MED 277 - Biomedical Natural Language Processing

RELICS

Regulatory Element Location Identification in CRISPR screens

scatac_motif_analysis

seurat

R toolkit for single cell genomics

zrcjessica.github.io

A beautiful, simple, clean, and responsive Jekyll theme for academics