Joy's repositories
vcf2phylip
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
30min_guides
覃健祥的学习笔记，各种几十分钟入门的文档
Bayesian_Workshop
Material for a Bayesian statistics workshop
BBMap
(Not Offical) BBMap short read aligner, and other bioinformatic tools.
CC-Linear-mixed-models
Introduction to linear mixed models
CC_course_stream1
All the course materials for the "Stats from Scratch" stream of our Data Science course
cmlHelpR
R-package of helper functions for the codeml_parallel pipeline
EUCLID
EUCLID project
mFD
:package: A Computation of Functional Spaces and Functional Diversity Indices
nf_ngschool20
Nextflow training material for NGSchool summer 2020
pavo
tools for the analysis of color data in R
PhyloHerb
PHYLOgenomic analysis pipeline for HERBarium specimens
PhyloNetworks.jl
A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks
phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
pkgbuild
Find tools needed to build R packages
R-graph-gallery
A website that displays hundreds of R charts with their code
R_for_Data_Science
Materials for teaching R and tidyverse
rio
A Swiss-Army Knife for Data I/O
RNAseq-workflow
A repository for setting up a RNAseq workflow
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
sam2consensus
Get the consensus sequences from SAM (and BAM) files, ignoring the reference
sensiPhy
R package to perform sensitivity analysis for comparative methods
sjPlot
sjPlot - Data Visualization for Statistics in Social Science
stat_rethinking_2020
Statistical Rethinking Course Winter 2020/2021
Statistical-Methods-Seminar-Series
Repository for code shared be presenters in the EFI hosted Statistical Methods Seminar Series