znicolaou

kuramoto

Integrate a large network of Kuramoto oscillators on a gpu with a random or user-specified adjacency matrix

faraday

Python code to simulate inviscid Faraday waves with finite elements

janus

Code to simulate rings of Janus oscillators used in "Multifaceted Dynamics of Janus Oscillator Networks," Z. G. Nicolaou, D. Eroglu, and A. E. Motter Phys. Rev. X 9, 011017 (2019).

pseudospectral_cgl

Pseudospectral code to integrate the complex Ginzburg-Landau equation in two dimensions used in Z.G. Nicolaou, H. Riecke, and A.E. Motter, Chimera states in continuous media: Existence and distinctness, Phys. Rev. Lett. 119, 244101 (2017).

snakingoscillators

anharmonic

Code to simulate arrays of pendula exhibiting anharmonic responses

auto-07p

AUTO is a publicly available software for continuation and bifurcation problems in ordinary differential equations originally written in 1980 and widely used in the dynamical systems community.

manybody

Integrate Newton's equations on a GPU

pysindy

A package for the sparse identification of nonlinear dynamical systems from data

ratematrix

Calculate transition rate matrix from Cantera model, "Non-normality and non-monotonic dynamics in complex reaction networks," Z. G. Nicolaou, T. Nishikawa, S. B. Nicholson, J. R. Green, and A. E. Motter, Phys. Rev. Research 2, 043059 (2020)

ratemeasure

Code to simulate rate constant estimates in incomplete complex chemistry networks, "Missing links as a source of variable constants in complex reaction networks," Z. G. Nicolaou and A. E. Motter, Phys. Rev. Research (2020)

rmtchem

Random networks of chemical reactions

uncorrelated

viscidfaraday

Floquet exponent continuation for viscid Faraday waves on periodic substrates

znicolaou.github.io