Znamenskiy lab

.github

ast_model

Asymmetric Student-t model for neuropil decontamination

bg-atlasapi

A lightweight python module to interact with atlases for systems neuroscience

bg-space

Anatomical space conventions made easy.

bonsai

The compiler, IDE, and standard library for the Bonsai visual programming language for reactive systems

BonVision

BonVision is an open-source closed-loop visual environment generator developed by the Saleem Lab and Solomon Lab at the UCL Institute of Behavioural Neuroscience in collaboration with NeuroGEARS.

brainglobe-napari-io

Read and write files from the BrainGlobe neuroanatomy suite

DeepLabCut

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

microscope-control

Utilities for two-photon and widefield imaging

python-cookiecutter

Utility to create a basic Python project structure with tests, CI etc.

rt_model_orsolic

ScanImageTools

MATLAB tools for running imaging experiments with ScanImage

senses-in-motion

Senses in Motion Symposium website

znamlab.github.io

Znamenskiy lab website

TIFFStack

Load TIFF files into matlab fast, with lazy loading