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zjhzxjm

zjhzxjm

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centrifuge

Classifier for metagenomic sequences

Language:C++License:GPL-3.0Stargazers:237Issues:0Issues:0

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

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samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

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awesome-python

An opinionated list of awesome Python frameworks, libraries, software and resources.

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bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Language:CLicense:GPL-3.0Stargazers:1484Issues:0Issues:0

django-admin-material

A Django Admin interface based on Material Design by Google

Language:HTMLLicense:MITStargazers:70Issues:0Issues:0

seqtk

Toolkit for processing sequences in FASTA/Q formats

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dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

Language:PythonLicense:MITStargazers:234Issues:0Issues:0

RAPSearch2

Reduced Alphabet based Protein similarity Search

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schedule

Python job scheduling for humans.

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surpi

SURPI

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templated-docs

Generate PDF, MS Word and Excel documents from templates in Django

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ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

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djangocms-shiny-app

A Django app for adding R Shiny apps to a Django site with django CMS-specific features

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pavian

🌈 Interactive analysis of metagenomics data

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pyfaidx

Efficient pythonic random access to fasta subsequences

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bioawk

BWK awk modified for biological data

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djangocms-genome-browser

A Django app for incorporating a Dalliance genome browser into a Django site with django CMS-specific features

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diag_pipelines

Pipelines dealing with high throughput sequencing data for microbiology diagnostic procedures. Documentation available at http://metagenlabdiag-pipelines.readthedocs.io/en/latest/ and Docker images at https://hub.docker.com/r/metagenlab/diag_pipelines/.

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atlas

ATLAS - Three commands to start analyzing your metagenome data

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cmdbtools

Command line tools for CMDB varaints browser

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composer

Visual and code editor for Common Workflow Language

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mysql-backup

image to enable automated backups of mysql databases in containers

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python-perl-dockerfile

Essentially the official Python and Perl images squished together

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python-pdfkit

Wkhtmltopdf python wrapper to convert html to pdf

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biom-format

The Biological Observation Matrix (BIOM) Format Project

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tasker

Tasker is a multipurpose task runner

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django-jet

Modern responsive template for the Django admin interface with improved functionality. We are proud to announce completely new Jet. Please check out Live Demo

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markdown-styles

Markdown to static HTML generator and multiple CSS themes for Markdown

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markdown

A Python implementation of John Gruber’s Markdown with Extension support.

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