Ziyao Li's repositories
AlphaFold3
To become an implementation of AlphaFold3 based on Uni-Fold.
molgan-without-mode-collapse
MolGAN without Mode Collapse
pku-optim-method
Peking University - Optimization Method - Gao, Li - Spring, 2018
af2_kuixu
Install alphafold on the local machine, get out of docker.
alphafold
Open source code for AlphaFold.
BroCParser
Rule based semantic parser of geo880.
ColabFold
Making Protein folding accessible to all!
ControlNet
Let us control diffusion models!
deepmd-kit
A deep learning package for many-body potential energy representation and molecular dynamics
diffab
✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
GraDe_IF
Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)
gvp-pytorch
Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure
Hearthstone-Deck-Tracker
A deck tracker and deck manager for Hearthstone on Windows
mile
PyTorch code for the paper "Model-Based Imitation Learning for Urban Driving".
MongeAmpereFlow
Continuous-time gradient flow for generative modeling and variational inference
OmegaFold
OmegaFold Release Code
PiFold
The official implementation of the ICLR'2023 paper PiFold: Toward effective and efficient protein inverse folding.
pkuthss
LaTeX template for dissertations in Peking University
ProteinMPNN
Code for the ProteinMPNN paper
RoseTTAFold
This package contains deep learning models and related scripts for RoseTTAFold
Uni-Core
an efficient distributed PyTorch framework
Uni-Fold
An open-source platform for developing protein models beyond AlphaFold.
USalign
Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins