Ziming Zhao's repositories
Gene-Drug-Association
Pipeline for Gene-Drug association for CCLE cancer cell line pharmacogenomic data
data-engineering-for-aws-immersion-day
Lab Instructions for Data Engineering Immersion Day
CancerEcologyPaperScripts
jupyter python scripts for treatment options and success rates for cancer and rat eradication
jax-tutorial
Tutorial for Jackson Labs intro to Nextflow, containers, FlowCraft and Deploit
immune_deconvolution_benchmark
Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://doi.org/10.1093/bioinformatics/btz363
ml-workshop-2-of-4
Intermediate Machine Learning with Scikit-learn, 4h interactive workshop
ml-workshop-1-of-4
Introduction to Machine learning with Python, 4h interactive workshop
ml-workshop-4-of-4
Advanced Machine Learning with Scikit-learn part II
ml-workshop-3-of-4
Advanced Machine Learning with Scikit-learn part I
sciclone
An R package for inferring the subclonal architecture of tumors
PDX-SOC
Drug response graphs for PDX tumors
okAPI
Recipes and Tutorials for Automation & Extension on the CGC and SBPLAT platforms
sciclone-meta
accessory scripts and documentation related to the sciclone R package at genome/sciclone