| ФИ | № группы | github |
|---|---|---|
| Шаймуратова Эмилия | 2 | https://github.com/Emilichka/hse21_H3K4me1_ZDNA_mouse_1 |
| Сафин Тагир | 2 | https://github.com/zilzilok/hse21_H3K4me1_ZDNA_mouse |
| Рябинин Андрей | 1 | https://github.com/ryandrey/hse21_H3K4me1_ZDNA_human |
| Барановская Дарья | 2 | https://github.com/darya-baranovskaya/hse21_H3K4me1_ZDNA_mouse_1 |
| Залялов Александр | 1 | https://github.com/vporyadke/hse21_H3K4me1_ZDNA_human |
| Кудрявцев Семен | 4 | https://github.com/semkud/hse21_H3K4me1_ZDNA_mouse |
| Фридман Михаил | 3 | https://github.com/Fryman420/bioinf2021_H3K4me1_human |
Посмотрев на участки полученные для пересечения, стало понятно, что данные анализа мыши содержат мало пиков, поэтому пики были расширены с помощью коменды bedtools slop.
Увеличение интервала.
ls *bed | xargs -I{} sh -c "bedtools slop -i {} -g hg19.chrom.sizes -b 500 > {}.bed"
track visibility=dense name="human" color=0,0,200 description="human_merge.bed.bed"
https://raw.githubusercontent.com/zilzilok/hse21_ZDNA_H3K4me1_group/main/data/slop/human_merged.bed
track visibility=dense name="mouse" color=0,200,0 description="mouse.bed"
https://raw.githubusercontent.com/zilzilok/hse21_ZDNA_H3K4me1_group/main/data/slop/H3K4me1_ZDNA_liftovered_toHg.bed.bed
track visibility=dense name="human_mouse_intersect" color=200,0,0 description="human_mouse_intersect.bed"
https://raw.githubusercontent.com/zilzilok/hse21_ZDNA_H3K4me1_group/main/data/slop/human_merged_mouse.bed
track visibility=dense name="human" description="human_merge.bed" color=200,0,0
https://raw.githubusercontent.com/zilzilok/hse21_ZDNA_H3K4me1_group/main/data/slop/human_merged.bed
track visibility=dense name="mouse" color=0,0,200 description=mouse.bed"
https://raw.githubusercontent.com/zilzilok/hse21_ZDNA_H3K4me1_group/main/data/slop/H3K4ME1_MEL_mouse.intersect.ZDNA1hg19.bed.bed
track visibility=dense name="human_mouse_intersect" description="Human_mouse_intersect.bed" color=0,200,0
https://raw.githubusercontent.com/zilzilok/hse21_ZDNA_H3K4me1_group/main/data/slop/human_mouse.bed