zihua's repositories
aizynthfinder
A tool for retrosynthetic planning
awesome-react-native
Awesome React Native components, news, tools, and learning material!
cameo
cameo - computer aided metabolic engineering & optimization
ColabFold
Making Protein folding accessible to all!
copy-paste-aug
Copy-paste augmentation for segmentation and detection tasks
detr
End-to-End Object Detection with Transformers
dl-visuals
Over 200 figures and diagrams of the most popular deep learning architectures and layers FREE TO USE in your blog posts, slides, presentations, or papers.
DockQ
DockQ is a single continuous quality measure for protein docked models based on the CAPRI evaluation protocol
electra
ELECTRA: Pre-training Text Encoders as Discriminators Rather Than Generators
esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
evodiff
Generation of protein sequences and evolutionary alignments via discrete diffusion models
freesasa
C-library for calculating Solvent Accessible Surface Areas
GECKO
Toolbox for including enzyme constraints on a genome-scale model.
gin-config
Gin provides a lightweight configuration framework for Python
nglview
Jupyter widget to interactively view molecular structures and trajectories
pyod
(JMLR'19) A Python Toolbox for Scalable Outlier Detection (Anomaly Detection)
pytorch-lightning
The lightweight PyTorch wrapper for high-performance AI research. Scale your models, not the boilerplate.
PyTorch-VAE
A Collection of Variational Autoencoders (VAE) in PyTorch.
rdkit
The official sources for the RDKit library
Real-Time-Voice-Cloning
Clone a voice in 5 seconds to generate arbitrary speech in real-time
RetroPathRL
Reinforcement Learning based bioretrosynthesis tool
RFdiffusion
Code for running RFdiffusion
score_sde_pytorch
PyTorch implementation for Score-Based Generative Modeling through Stochastic Differential Equations (ICLR 2021, Oral)
se3_diffusion
Implementation for SE(3) diffusion model with application to protein backbone generation
stable-diffusion
A latent text-to-image diffusion model
transformers
🤗Transformers: State-of-the-art Natural Language Processing for Pytorch and TensorFlow 2.0.
Yeast-Species-GEMs
A universal metabolic model knowledge database (pan-GEM) for current existing yeast species with genome sequence, based on which we will build the GEMs of high quality for each yeast species.
you-get
:arrow_double_down: Dumb downloader that scrapes the web