Yu Zhou's repositories
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
Basset
Convolutional neural network analysis for predicting DNA sequence activity.
cocoapi
COCO API - Dataset @ http://cocodataset.org/
course-v3
The 3rd edition of course.fast.ai
cutadapt
Cutadapt removes adapter sequences from sequencing reads
Detectron
FAIR's research platform for object detection research, implementing popular algorithms like Mask R-CNN and RetinaNet.
dlaicourse
Notebooks for learning deep learning
Doing_bayesian_data_analysis
Python/PyMC3 versions of the programs described in Doing bayesian data analysis by John K. Kruschke
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)
gridtools
Tools for analyzing genome-wide RNA-chromatin interaction data
handson-ml
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.
hmmlearn
Hidden Markov Models in Python, with scikit-learn like API
intro-to-dl
Resources for "Introduction to Deep Learning" course.
keras-yolo2
Easy training on custom dataset. Various backends (MobileNet and SqueezeNet) supported. A YOLO demo to detect raccoon run entirely in brower is accessible at https://git.io/vF7vI (not on Windows).
Mask_RCNN
Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow
nanopolish
Signal-level algorithms for MinION data
OnlinePythonTutor
Visualize Python, Java, JavaScript, TypeScript, Ruby, C, and C++ code execution in your Web browser
PPBayesianMeth
aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)
pymed
PyMed is a Python library that provides access to PubMed.
pysamstats
A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.
pytorch-transformer
Attention is all you need implementation
sequana
Sequana: a set of Snakemake NGS pipelines
stanford-cs-229-machine-learning
VIP cheatsheets for Stanford's CS 229 Machine Learning
stanford-tensorflow-tutorials
This repository contains code examples for the Stanford's course: TensorFlow for Deep Learning Research.