Code Required to reproduce results for Ambient Temperature and Risk of Urinary Tract Infection in California: a Time-Stratified Case-Crossover Study Using Electronic Health Records by Elser and Rowland et al.
Notes: The patient data is HIPPA-protected and not publicly available; I have included code to generate results with simulated ('fake') data to allow researchers to follow the logic and the code and to facilitate code review.
Code Sections: 0: setting up the R environment 1: captain script to prepare all data and run analysis a: process data a_xxa: process real data a_xxb: process fake data b: generate descriptive plots (not in manuscript) c: fit main models d: fit sensitivity analyses e: fit exploratory analyses (not included in manuscript or repo) f: generate initial plots (not included in manuscript or repo) g: generate plots, tables, and figures for manuscript