Beast code in Giters

Tao's repositories

Workflow for Building Microsynteny Networks

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Synteny matrix representation with maximum likelihood pipeline

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An implementation of the DeepMind's AlphaFold based on PyTorch for research

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A collection of scripts, pipelines, and other resources that have been created and used by our team.

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new layout algorithms for network visualizations in R

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Python utility libraries on genome assembly, annotation and comparative genomics

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SNAP Python code, SWIG related files

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Statistical analysis of gene family evolution using phylogenetic birth-death processes

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Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

Language:PythonGPL-3.0010

Multi-level network clustering based on the Map equation

Language:C++AGPL-3.0020

multiNetX is a python package for the manipulation and visualization of multilayer networks. It is build on NetworkX

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Fast and accurate de novo assembler for third generation sequencing (TGS) reads

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Simulate gene family syntenic networks.

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Python wrappers for programs that search for transposable elements

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Search flexible patterns within tree structures using regular expression like syntax.

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