Zeid Hamadeh's repositories
Alignment-Pipeline
Strand-seq alignment pipeline for both paired end and single end reads
Covid-Exponential-Growth---ShinyApp
Shiny app I built to track COVID19 cases/deaths by country on a daily basis and weekly rolling average
aneufinder
Find CNVs in single cell sequencing data.
ASWorkflow
Adaptive_sampling_Workflow
beautiful-jekyll
✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
Breakpointer---SCE-analysis
Sister chromatid exchange analysis from Strand seq data
CoNoVariants
Copy number variant detection in sc WGS
Enricher---Enrichment-analysis-for-SCEs
Enrichment test plotting for Strand Seq data
SequencingLibraryClassifier
Automation of Strandseq library quality filter
StrandSeeker
Modified breakpoint analysis of Strand-seq data from daewoooo/breakpointR
Feb25-NextSeq-Analysis
Sister chromatid exchange analysis from Feb 25th sequencing run
HackSeq2019-FluVaccine
Hackseq 2019 hackathon project repo
HanlonDiagonal
Custom diagonal dispensing program on CellenONE
mosaicatcher-pipeline
Integrated workflow for SV calling from single-cell Strand-seq data
StraVa
Structural variant detector using strand-state changes
THESIS
Analysis for PhD thesis