zengsn / 3D-WaveUNet

3D-WaveUNet [paper]

(0) Neuron Sewgmentation using 3D Wavelet Integrated Encoder-Decoder Network

(1) Training 3D WaveUNet on NeuCuDa

main.py

(2) The dataset: NeuCuDa

NeuCuDa is on the website https://pan.baidu.com/s/1CvsI4OvXkfNu0m-Bfk_yQQ (passwords: jdqe)

(3) The trained weight files

will be released

(4) Segmenting 3D neuronal images

main_denoise.py

(5) Tracing segmented neuronal images and evaluting the reconstructions

main_compare.py

(6) The paper

If the code or method help you in the research, please cite the following paper:

@article{li2021neuron,
  title={Neuron segmentation using 3D wavelet integrated encoder-decoder network},
  author={Li, Qiufu and Shen, Linlin},
  journal={Bioinformatics},
  year={2021},
  doi={https://doi.org/10.1093/bioinformatics/btab716}
}