zengsihang

minGPT

A minimal PyTorch re-implementation of the OpenAI GPT (Generative Pretrained Transformer) training

mamba

Mamba SSM architecture

ChatGPTAPIFree

A simple and open-source proxy API that allows you to access OpenAI's ChatGPT API for free!

LLM-Agent-Survey

s4

Structured state space sequence models

Awesome-LLM-KG

Awesome papers about unifying LLMs and KGs

Awesome-Graph-LLM

A collection of AWESOME things about Graph-Related LLMs.

OpenAI-CLIP

Simple implementation of OpenAI CLIP model in PyTorch.

KG_RAG

Empower Large Language Models (LLM) using Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) for knowledge intensive tasks

latent_ode

Code for "Latent ODEs for Irregularly-Sampled Time Series" paper

torchcde

Differentiable controlled differential equation solvers for PyTorch with GPU support and memory-efficient adjoint backpropagation.

MIMIC_Extract

MIMIC-Extract:A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-III

COVID-QA

API & Webapp to answer questions about COVID-19. Using NLP (Question Answering) and trusted data sources.

auton-survival

Auton Survival - an open source package for Regression, Counterfactual Estimation, Evaluation and Phenotyping with Censored Time-to-Events

clicr

Machine reading comprehension on clinical case reports

GRU-D

GRU-D, a GRU-based model with trainable decays for multivariate time series classification with missing values/irregular samplings

GRU-D

Gated Recurrent Unit with a Decay mechanism for Multivariate Time Series with Missing Values

biomedical-qa-datasets

Biomedical Question Answering Datasets.

Dynamic-DeepHit

Dynamic-DeepHit: A Deep Learning Approach for Dynamic Survival Analysis With Competing Risks Based on Longitudinal Data

Counterfactual-Recurrent-Network

Code for ICLR 2020 paper: "Estimating counterfactual treatment outcomes over time through adversarially balanced representations" by I. Bica, A. M. Alaa, J. Jordon, M. van der Schaar

UltraMedical

UltraMedical: Building Specialized Generalists in Biomedicine

Orphadata_aggregated

Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases

doc2hpo

DeepSurvivalMachines

TE-CDE

Continuous-Time Modeling of Counterfactual Outcomes Using Neural Controlled Differential Equations (ICML 2022)

DynamicDeepHit

Dynamic Deep Hit - Pytorch implementation

trajectories

Code for the paper "Representing Spatial Trajectories as Distributions"

sepsis_subphenotype

llms-vote

Code for the Paper "Large Language Models Vote: Prompting for Rare Disease Identification"

survlatent_ode