Fuming Zeng's repositories
biotransfer_learn
Machine learning-driven antibody design
GraphMAE
GraphMAE: Self-Supervised Masked Graph Autoencoders in KDD'22
HGMAE
Code & data for AAAI'23 Oral paper "Heterogeneous Graph Masked Autoencoders".
masif_feature
MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
masif_pymol_plugin
note about loading and using this plugin
masif_seed
Masif seed paper repository
Multiple-ParA-MinD-ATPases
Repository for the Rosetta scripts used to generate models/ddG predictions presented in "Multiple ParA/MinD ATPases coordinate the positioning of disparate cargos in a bacterial cell" by Pulianmackal et al.
OpenCRISPR
AI-generated gene editing systems
RFdiffusion
Code for running RFdiffusion
structure_driven_ligand_design
Use of high throughput crystallography data in predictive ligand design & the code associated with the paper "Turning high-throughput structural biology into predictive inhibitor design" (Saar et al. 2021, bioRxiv)