zdk123

SpiecEasi

Sparse InversE Covariance estimation for Ecological Association and Statistical Inference

compPLS

An R package for Partial Least Squares analysis and plotting for (high dimensional) compositional data

pulsar

pulsar: Parallel Utilities for Lambda Selection along a Regularization Path

huge

High-Dimensional Undirected Graph Estimation

latentcor

latentcor is an R package provides estimation for latent correlation with mixed data types (continuous, binary, truncated and ternary).

mixedCCA

R package for sparse canonical correlation analysis with mixed data types (continuous, binary, zero-truncated)

advent_of_code_2022

Advent of code, solutions in Rust

advent_of_code_2023

antismash-mibig

"mibig mode" antiSMASH implementation

bacass

Simple bacterial assembly and annotation pipeline.

FGW

Code for Optimal Transport for structured data with application on graphs

gggenes

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

indextree

Arena based tree 🌲 structure by using indices instead of reference counted pointers

linfa

A Rust machine learning framework.

metric-learn

Metric learning algorithms in Python

mibig-html

mibig-json

Repository to track changes in MIBiG curation data stored in JSON format

micromamba-docker

Micromamba for fast building of small conda-based containers

ms2deepscore

Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity

ncbi-acc-download

Download files from NCBI Entrez by accession

nerpa

noodles

Bioinformatics I/O libraries in Rust

POT

POT : Python Optimal Transport

prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

protein-prompt-tuning

Implementation for paper Evaluating Prompt Tuning for Conditional Protein Sequence Generation

pyhmmer

Cython bindings and Python interface to HMMER3.

pyrcca

Regularized kernel canonical correlation analysis in Python

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

stringdist

String distance functions for R

wordlesolver

Solver for Wordle