zavolanlab / tin-score-calculation

Given a set of BAM files and a gene annotation BED file, calculates the Transcript Integrity Number (TIN) for each transcript.

zavolanlab/tin-score-calculation Issues

Error running calculate-tin.py
Updated 3 months ago1
BED file / possible to use GTF directly?
Closed 4 months ago3
tin score calculation does not produce proper output for >1 bamfiles provided
Updated 3 years ago
TIN score calculation uses too many threads
Closed 3 years ago3
Mac version of tin-score-calculation is slow
Closed 3 years ago2
Update documentation for version 0.5
Closed 3 years ago4
Eliminate dependencies
Closed 3 years ago3
calculate-tin.py is giving an error when we used it for a bed file generated with s. cerevisiae gtf file
Closed 3 years ago
clean docker-related files
Closed 3 years ago3
Automatic upload of tin-score-calculation package to pypi
Closed 3 years ago
Documentation cleaning
Closed 3 years ago
ci: comparing against a ground truth output
Closed 3 years ago
Python 3
Closed 3 years ago
License
Closed 3 years ago