zavolanlab / PAQR_KAPAC

scripts, pipelines and documentation to run PAQR and KAPAC; KAPAC allows to infer regulatory sequence motifs implicated in 3’ end processing changes; PAQR enables the quantification of poly(A) site usage from standard RNA-seq data

zavolanlab/PAQR_KAPAC Issues

Missing conda packages break creation of py2_paqr environment.
Closed 4 years ago2
Errors when running PAQR step2
Updated 4 years ago14
Updating mm10 annotation files with PolyASite 2.0 release
Updated 4 years ago6
Further question about how to properly set up the sample relationships
Updated 4 years ago3
Intronic polyadenylation quantification
Updated 4 years ago2
config.yaml has a readlength parameters which is not mentioned in the README
Closed 5 years ago1
Error in rule infer_relative_usage UnboundLocalError: local variable 'end_idx' referenced before assignment
Closed 5 years ago4
Error in rule infer_relative_usage: TypeError: not all arguments converted during string formatting
Updated 5 years ago1
annotation files for hg19
Updated 5 years ago1
use custome annotation
Closed 5 years ago4
Infer relative usage: IndexError: list index out of range
Closed 5 years ago2
snakemake symlink problem
Closed 5 years ago1
Incorrect indentation in one of the scripts.
Updated 5 years ago3
Error in setting up the environment
Updated 5 years ago6
Input files for KAPAC
Updated 5 years ago6
annotation files for mm10
Closed 5 years ago2
README missing R and SRA tools version
Closed 6 years ago1
Error when generating paqr_kapac virtual environment
Closed 6 years ago4