zanmer / spatial-datasets

overview of spatial datasets

spatial datasets

Repository of spatial datasets. Each dataset has its own folder with subfolders for:

• raw data
• single-cell count matrix
• single-cell locations
• giotto R-script with secondary analyis (when available)

Available datasets

2019

10X visium brain

• directory

10X visium kidney

• directory

seqFISH+ somatosensory cortex

• paper
• directory

seqFISH+ olfactory bulb

• paper
• directory

slide-seq cerebellum

• paper
• directory

---

2018

STARmap 3D cortex

• paper
• directory

osmFISH somatosensory cortex

• paper
• directory

merFISH 3D hypothalamic preoptic region

• paper
• directory

---

2016

Spatial Transcriptomics

• paper
• directory

Soon available datasets

1. slide-seq
2. merFISH
3. ...