zakajd / kaggle-pneumothorax

Solution for SIIM Pneumothorax 2019 challenge

kaggle-pneumothorax

Solution of Kaggle Pnumothorax challenge

Installation

1. Clon the repo
2. Install all the requirements pip install --user -r requirements.txt To reproduce the solution, run following commands:

make load
make preprocess

Code organization

├── README.md             <- Top-level README.
├── Makefile        <-  Used to make everything in this project
│
├── confings    <- Parameters for traing 
│   ├── default.yaml         <- Default parameters
│   ├── unet.yaml          <- Over-write some default values for model training
│
├── data       <- All data must be here
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├── docker        <- Container for easy reprodusable solution (NOT working yet)
├── logs        <- TensorBoard logging to monitor training
├── models        <- Pretrained models saved as `*.ckpt`
├── notebooks        <- Jupyter Notebooks
│   ├── Testing.ipynb   <- Develompent related stuff                  
│   ├── Demo.ipynb  <- Demonstation of the results
├── src        <- Code